Merge pull request #1620 from pymor/update_sphinx_config

update myst-nb config for new release

.ci/conda-env.yml

@@ -22,7 +22,6 @@ dependencies:
   - meshio>=4.4
   - mpi4py>=3.0
   - mpi4py>=3.0.3
-  - myst-nb
   - nbconvert
   - nbresuse
   - numpy>=1.16.0
@@ -42,7 +41,7 @@ dependencies:
   - setuptools
   - slycot>=0.4.0
   - sphinx-autoapi>=1.8
-  - sphinx>=3.4
+  - sphinx>=4.0
   - sympy
   - twine
   - typer

.ci/gitlab/ci.yml

@@ -23,8 +23,8 @@ stages:
           when: never
         - when: on_success
     variables:
-        PYPI_MIRROR_TAG: 94604308a724fed5167af7761eb1536c4d13bad6
-        CI_IMAGE_TAG: 94604308a724fed5167af7761eb1536c4d13bad6
+        PYPI_MIRROR_TAG: 992e89d4d2d801ab6a8186b4f6bce11367f1095c
+        CI_IMAGE_TAG: 992e89d4d2d801ab6a8186b4f6bce11367f1095c
         PYMOR_HYPOTHESIS_PROFILE: ci
         PYMOR_PYTEST_EXTRA: ""
         BINDERIMAGE: ${CI_REGISTRY_IMAGE}/binder:${CI_COMMIT_REF_SLUG}

.env

@@ -2,8 +2,8 @@ DOCKER_BASE_PYTHON=3.9
 PYMOR_TEST_SCRIPT=vanilla
 PYPI_MIRROR=stable
 PYMOR_TEST_OS=debian-buster
-PYPI_MIRROR_TAG=94604308a724fed5167af7761eb1536c4d13bad6
-CI_IMAGE_TAG=94604308a724fed5167af7761eb1536c4d13bad6
+PYPI_MIRROR_TAG=992e89d4d2d801ab6a8186b4f6bce11367f1095c
+CI_IMAGE_TAG=992e89d4d2d801ab6a8186b4f6bce11367f1095c
 PYMOR_HYPOTHESIS_PROFILE=dev
 PYMOR_PYTEST_EXTRA=--lf
 

dependencies.py

@@ -61,9 +61,9 @@ install_suggests = {
 }
 io_requires = ['pyevtk', 'xmljson', 'meshio>=4.4', 'lxml', 'gmsh']
 install_suggests.update({p: 'optional File I/O support libraries' for p in io_requires})
-doc_requires = ['sphinx>=3.4', 'matplotlib', _PYSIDE, 'ipyparallel>=6.2.5', 'python-slugify',
+doc_requires = ['sphinx>=4.0', 'matplotlib', _PYSIDE, 'ipyparallel>=6.2.5', 'python-slugify',
                 'ipywidgets', 'sphinx-qt-documentation', 'bash_kernel', 'sphinx-material',
-                'sphinxcontrib-bibtex', 'sphinx-autoapi>=1.8', 'myst-nb'] + install_requires
+                'sphinxcontrib-bibtex', 'sphinx-autoapi>=1.8', 'myst-nb>=0.14'] + install_requires
 ci_requires = [_PYTEST, 'pytest-cov', 'pytest-xdist', 'check-manifest', 'nbconvert', 'pytest-parallel',
                'readme_renderer[md]', 'rstcheck', 'codecov', 'twine', 'pytest-memprof',
                'flake8-rst-docstrings', 'flake8-docstrings', 'pytest-datadir', 'pybind11',

docs/source/conf.py

@@ -56,15 +56,15 @@ myst_enable_extensions = [
     "replacements",
     "substitution",
 ]
-myst_url_schemes = ["http", "https", "mailto"]
+myst_url_schemes = ("http", "https", "mailto")
 # auto genereated link anchors
 myst_heading_anchors = 2
 import substitutions # noqa
 myst_substitutions = substitutions.myst_substitutions
-jupyter_execute_notebooks = "cache"
-execution_timeout = 120
+nb_execute_notebooks = "cache"
+nb_execution_timeout = 120
 # print tracebacks to stdout
-execution_show_tb = True
+nb_execution_show_tb = True
 
 bibtex_bibfiles = ['bibliography.bib']
 # Add any paths that contain templates here, relative to this directory.

requirements-optional.txt

@@ -18,7 +18,7 @@ matplotlib
 meshio>=4.4
 mpi4py>=3.0.3;python_version >= "3.9"
 mpi4py>=3.0;python_version < "3.9"
-myst-nb
+myst-nb>=0.14
 nbresuse
 numpy>=1.16.0;python_version == "3.7"
 numpy>=1.17.5;python_version == "3.8"
@@ -40,7 +40,7 @@ slycot>=0.4.0
 sphinx-autoapi>=1.8
 sphinx-material
 sphinx-qt-documentation
-sphinx>=3.4
+sphinx>=4.0
 sphinxcontrib-bibtex
 sympy
 torch