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Analysis tool for hybrid Petri nets with general transitions.

Detect 6 types of rearrangement events for protein domain arrangements and their fraction for a set of proteomes across a given phylogeny.

Combined Animal Tracking & Environment Reconstruction

Grinder Web is a port of Grinder to run directly inside a browser.

Sccuot is a command-line tool to retrieve usage and resource information of an ownCloud 10 instance. It can be used to gather various statistics, like the quota used per user, and to create snapshots of these statistics.

This is a fork of the original VascuSynth project (vascusynth.cs.sfu.ca) with some additional patches.

A pipeline for domain evolution of protein families

Program to search for domain arrangements

Benchmarks (Repo)

Test bed for scripting the merge

Core library containing basic functions dealing with biological sequences, domains, phylogeny and related data.