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pyMOR - Model Order Reduction with Python

A fast domain annotation program.

Analysis tool for hybrid Petri nets with general transitions.

Core library containing basic functions dealing with biological sequences, domains, phylogeny and related data.

Program to search for domain arrangements

Combined Animal Tracking & Environment Reconstruction

Detect 6 types of rearrangement events for protein domain arrangements and their fraction for a set of proteomes across a given phylogeny.