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Analysis tool for hybrid Petri nets with general transitions.

Combined Animal Tracking & Environment Reconstruction

Grinder Web is a port of Grinder to run directly inside a browser.

Detect 6 types of rearrangement events for protein domain arrangements and their fraction for a set of proteomes across a given phylogeny.

Sccuot is a command-line tool to retrieve usage and resource information of an ownCloud 10 instance. It can be used to gather various statistics, like the quota used per user, and to create snapshots of these statistics.

This is a fork of the original VascuSynth project (vascusynth.cs.sfu.ca) with some additional patches.

Program to search for domain arrangements

A pipeline for domain evolution of protein families

Benchmarks (Repo)

Core library containing basic functions dealing with biological sequences, domains, phylogeny and related data.